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Features

Supported CNV File Formats

  • PennCNV
  • QuantiSNP
  • Affymetrix Genotyping Console
  • Microsoft Excel
  • Comma Separated Values

Supported SNP Arrays

  • Affymetrix SNP Array 500K
  • Affymetrix SNP Array 5.0
  • Affymetrix SNP Array 6.0

Supported Phenotype File Formats

  • Microsoft Excel
  • Comma Separated Values

Algorithms

  • Genome-wide CNVR-determination
  • Genome-wide CNV-phenotype association analysis
  • Genome-wide SNP-CNV-phenotype association analysis

Visualization

  • Interactive Manhattan Plot with automatically drawn Bonferroni-threshold line
  • Visualization of the distribution of detected CNV regions on each chromosome
  • Exporting of all visualizations as PNG and JPEG images

Analysis

  • Filtering and searching of statistical results
  • Highlighting of genome-wide significant results
  • Highlighting of regions which fit with results from the GWAS database
  • Exporting of all results as Microsoft Excel or CSV-Files
  • Direct links to entries in public databases: UCSC Genome Browser, NCBI dbSNP, Ensembl, HapMap
Last Updated on Wednesday, 22 September 2010 09:47
 
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